Streamlining the discovery of biomarkers with cytometry data
Cytofit is a SaaS under development, that aim to simplify the workflows of mass cytometry analysis.
Satisfied
Customers
Developed with experts in the field of cytometry.
Increased Efficiency in Mass Cytometry
Reducing the need for preprocessing, manual gating and analysis
Efficient processing of mass cytrometry data is essential for accelerating biomarker discovery and advancing precision medicine. By streamlining workflows and improving data accuracy, scientists will unlock critical insights that drive breakthroughs in healthcare and improve patient outcomes.
Features
The Cytofit software is under development, based on successful preliminary pilots with respectful institutions.
When launched, you will experience assisted preprocessing of data, semi-automated workflows and a user friendly design.
We are working on implementing the following features.
Data
Storage
Upload FCS files or set up a data pipeline to automate data input seamlessly.
Feature
Extraction
Compute biologically, meaningful metrics likes relative abundances and functional marker expression.
Data
Cleaning
Ensure data comparability with automated quality control, compensation, normalization, and transformation methods.
Predictive
Modeling
More patient data over time will enable opportunities to implement AI models to improve gating strategies and endpoints.
Assisted
Gating
Assisted and simplified setup of gating strategies for mass cytometry data ,based on biomarker data distributions.
Advanced
Analysis
Single-time-point or differential analysis between conditions. Explore data with
dimensionality reduction.
Subpopulation
Clustering
Cluster events into biologically-relevant cell subpopulations, offering hard/soft clustering and scoring functions to match preset phenotypes.
Report
Generation
Automatically build transparent reports that summarise the workflow. Quickly share your findings with others.
Streamline the workflow in a secure environment
Cytofit will be designed to ensure a secure way of storing and treating patient data. Uploaded data will be anonymised and stored in a secure cloud environment to ensure patient confidentiality.
We are aiming to enable medical insights in a simple and secure way with our end-to-end solution for mass cytometry analysis.
Secure and Flexible Cloud Platform
Pricing - For Early Birds
We offer different packages, from on-demand analysis services to pre-ordering for early birds.
On-Demand
One-Time Analysis of FCS Files
Secure Data Handling
Preprocess & Data Cleaning
Defined Goals & Biomarkers
Different Gating Strategies
Subpopulation Clustering
Advanced Analysis + Report
Full Transparency
Perfect for pilot projects, urgent one-off analyses, or labs with limited in-house mass cytometry expertise.
Research - Mass
Unlimited FCS uploads
Automated Pre-Processing
Assisted Semi-Automatic Gating
Integrated Advanced Analysis
Differential expression
Automated Feature Extraction
Visualisation & Result Reporting
€150 per Additional Seat
Pre-Order Cytofit,accelerate your biomarker discovery with an end-to-end cloud platform for mass cytometry workflows and analysis
Enterprise
Custom User Seats & Roles
Multiple Research Groups
Dedicated Support & SLA
Advanced Modules
Integration With Other Systems
Cloud/On-Premise Deployment
Integrated Workflows
Product Development Partner
Enterprise solution for organisations that need robust compliance, custom features, and guaranteed support.
Our Story
Reinventing the
Workflow
Cytofit is a cloud-based SaaS solution under development that contains all essential mass cytometry data processing tools. Our software will be designed to streamline the workflow from data collection to clinical application in the context of translational precision medicine.
Cytofit is being developed by experts from Expert Analytics AS, in combination with field experts in mass cytometry.
How it Works
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Analysing the
Data
Use Cytofit as an all-in-one solution for preprocessing, gating and analysing of mass cytometry data. Upload your data and find relevant information and insights within our advanced analysing tool.
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Cloud Based
Technology
Cytofit will be a SaaS solution for bioinformaticians that is looking for the best software to save time on manual gating and analysing cytometry data.
Interested in learning more about Cytofit, or becoming a beta tester? Reach out!
Our Mission
Cytofit’s design is being built on four core principles: Integration, automation, analysis and visualisation. Improving these four aspects will allow stronger collaborations between clinical laboratories, industry, healthcare professionals and researchers.
Integration
Cytofit will be a unified framework to store, preprocess, analyse and visualise the data. This integrated pipeline accounts for the needs of the different specialists involved at the various stages of mass cytometry data processing. The streamlining of the workflow in turn improves the information flow between all experts and institutions involved.
Automation
Cytofit will automate repetitive tasks and minimise subjective user input. By standardising the data processing workflow, our tool will provide users with robust results comparable across different datasets and scientific publications. Therefore, we will increase the comparability of mass cytometry data and allow for more impactful conclusions to be drawn.
Analysis
Cytofit will include a range of adjustable analysis models from basic linear regressions to advanced statistical models. Such analysis models are used for biomarker discovery and to provide increased insights on patients’ responses to treatments. The analysis features will have an intuitive and transparent interface so non-experts can interpret the output.
Visualization
Cytofit will generate high-quality visualisations. These will include interactive figures that enable intuitive data exploration, helping detect hidden, clinically relevant correlations within and between experiments. We will leverage dimensionality reduction algorithms to visualise the mass cytometry data. This functionality will be built with a user-friendly interface with an intuitive user guide.